Sure, it should work fine. Any hydro D-series trans should work just fine.
BTW, have you actually looked at your engine to verify what you have? There should be an ID number on a flat boss on the front side right by the clutch housing. You may have to clean some grime off, but it should say "D16Z6" or "B16A" or whatever. It sounds like there's some doubt, and that will remove it.
-soD
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