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I agree with Charlie. Doing a refactoring without version control is going to be very tough. With it - one of us - could refactor the code on a branch while you continue making changes to the current code. Then - at a time of your choosing - that branch could be merged to the trunk. You'll hopefully suddenly have beautiful code that works identically to what used to be on the trunk.
I haven't worked with an avr chip before, and I'm still setting up my dev environment. Paul, what environment are you using? I might as well make sure I'm running the same thing.
Charlie, can I have access to your repository?
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