That, and the exhaust and intake charges are free to migrate across log and even tube manifolds.
I'd go for shorting out the two unused high tension ign wires because coils don't like conflicting signals. If you don't short out the high tension side, then remove the triggers for the induction side.
On mine I was planning to make it 100% reversible, as I would be starting with a good engine and on the chance this is a failure, would want to restore 4 cyl operation. You don't have that problem though.
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