Hondo,
Your problem might be in you pedal. Count the series of red LED flashes. If the red LED flashing twice with a short pause and then four flashes, then you pedal is out of range. You can reprogram the controller for the percentage of dead zone on each end. If you controller is currently set to 10% then change it to 20%. What this will do is cause you to push down on the pedal a little more before you begin to move. This is a safety feature that basically will not allow the controller to operate if it senses the pedal is pushed down a little when the controller is turned on. Some pedals when released don't go all the way to the end of the rotation of the potentiometer or hall effect, which ever you have.
Just a thought....
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