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"deprecated conversion from string constant to 'char*'" and others about string pointer come from c++ that does not understand pretty well the PSTR() macro, it's harmless.
The only ones you should take a look at are:
line 175: 'tankHold' may be used uninitialized in this function
and maybe
line 1374: comparison between signed and unsigned integer expressions
If you have a .hex you should be able to flash your chip, with either avrdude or avrstudio.
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2013 Hyundai Sonata Hybrid
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