You can cut off the precharge and contactor wire and LED wire. The LED does nothing at this point. Cut it off too if you want. I think your code is fine except the temperature sensing is disabled. If you want to jack into the temperature probe wire pair, and monitor its resistance, that would be fine and dandy.
Oh yes, the 6th pin (furthest away from the pin with the arrow on the pickit3) is unused.
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