Look into the Wilson Antenna W1000 model. It's a removable hard mount setup. The permanent roof mounted part looks like this:
https://www.google.com/url?sa=i&rct=...79746442489466
(EDIT: Ok, that link doesn't got directly to the picture I had in mind, but the guys install pictures are about 2/3rds of the way down that thread page with the base installed without the cap, as well as a finished one farther down.)
It has a cap that screws on to keep it weather proof. This is the base that screws on with a 5' whip.
https://www.google.com/url?sa=i&rct=...79746442489466
I had this setup on my 2002 Toyota Tacoma almost since the day I bought it until I sold it 4 years ago. Paired with a good Cobra CB, I always had the best transmission and reception distance among the 4 wheelers out on the trails. Virtually no drag penalty without the antenna on since it's only about a 2" high bump above the roof line. Bring the antenna out of the trunk or wherever it's stored and screw it on if you need to use it.